STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_4591PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: ccr:CC_0111 DNA-binding protein, putative. (168 aa)    
Predicted Functional Partners:
Caul_4592
KEGG: esa:ESA_02045 hypothetical protein.
       0.768
Caul_4593
KEGG: ccr:CC_0112 hypothetical protein.
 
     0.638
Caul_4590
TIGRFAM: thioredoxin; PFAM: Tetratricopeptide TPR_2 repeat protein; Thioredoxin domain; KEGG: ccr:CC_0110 thioredoxin.
       0.594
Caul_4589
PFAM: peptidase S16 lon domain protein; KEGG: ccr:CC_0109 ATP-dependent protease La domain protein.
       0.593
Caul_4588
PFAM: protein of unknown function DUF343; KEGG: ccr:CC_0108 hypothetical protein; Belongs to the UPF0434 family.
 
     0.495
Caul_3036
KEGG: ccr:CC_1366 hypothetical protein.
  
     0.445
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.