Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Caul_4697Agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: ccr:CC_0211 hypothetical protein; Belongs to the agmatine deiminase family. (336 aa)    
Predicted Functional Partners:
Caul_4696
TIGRFAM: N-carbamoylputrescine amidase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ccr:CC_0212 hydrolase, carbon-nitrogen family.
 
 0.999
aguA
KEGG: pla:Plav_1144 agmatine deiminase; TIGRFAM: agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase.
  
  
 
0.914
Caul_4440
PFAM: Saccharopine dehydrogenase; KEGG: nar:Saro_1790 saccharopine dehydrogenase.
    
  0.905
Caul_2961
PFAM: amino acid permease-associated region; KEGG: pla:Plav_1143 amino acid permease-associated region.
 
   
 0.560
Caul_0941
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ccr:CC_0828 carbon-nitrogen hydrolase family protein.
  
 0.521
Caul_4698
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccr:CC_0210 TonB-dependent receptor.
       0.485
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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