Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Caul_4792PFAM: glycoside hydrolase family 16; Hemolysin-type calcium-binding region; KEGG: sme:SMb20932 endo-1,3-1,4-beta-glycanase, C-terminal secretion signal protein. (608 aa)    
Predicted Functional Partners:
Caul_4806
KEGG: swi:Swit_4524 hypothetical protein.
 
   
 0.455
Caul_1844
PFAM: glycoside hydrolase family 10; KEGG: ccr:CC_2803 glycosyl hydrolase, family 10.
 
   
 0.454
Caul_1303
PFAM: glycoside hydrolase family 3 domain protein; KEGG: ccr:CC_0797 1,4-beta-D-glucan glucohydrolase D.
 
  
 0.414
Caul_0152
PFAM: glycoside hydrolase family 3 domain protein; KEGG: ccr:CC_2052 1,4-beta-D-glucan glucohydrolase D.
 
  
 0.408
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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