Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
NCU08728 | NCU08812 | Q1K8V2 | Q7S8F8 | Mitochondrial ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family. | Uncharacterized protein. | 0.403 |
NCU08728 | rsm-25 | Q1K8V2 | Q873E4 | Mitochondrial ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family. | 37S ribosomal protein S25, mitochondrial. | 0.947 |
NCU08812 | NCU08728 | Q7S8F8 | Q1K8V2 | Uncharacterized protein. | Mitochondrial ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family. | 0.403 |
NCU08812 | cpc-1 | Q7S8F8 | P11115 | Uncharacterized protein. | Cross-pathway control protein 1; In N.crassa grown under amino acid starvation conditions, this protein is required for increasing the transcription of the genes coding for many amino acid biosynthetic pathways enzymes. This transcription factor binds and recognize the DNA sequence: 5'-TGACTC- 3'. | 0.783 |
NCU08812 | ham-3 | Q7S8F8 | Q7SCF4 | Uncharacterized protein. | Striatin Pro11. | 0.404 |
NCU08812 | rsm-25 | Q7S8F8 | Q873E4 | Uncharacterized protein. | 37S ribosomal protein S25, mitochondrial. | 0.424 |
cpc-1 | NCU08812 | P11115 | Q7S8F8 | Cross-pathway control protein 1; In N.crassa grown under amino acid starvation conditions, this protein is required for increasing the transcription of the genes coding for many amino acid biosynthetic pathways enzymes. This transcription factor binds and recognize the DNA sequence: 5'-TGACTC- 3'. | Uncharacterized protein. | 0.783 |
ham-3 | NCU08812 | Q7SCF4 | Q7S8F8 | Striatin Pro11. | Uncharacterized protein. | 0.404 |
rsm-25 | NCU08728 | Q873E4 | Q1K8V2 | 37S ribosomal protein S25, mitochondrial. | Mitochondrial ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family. | 0.947 |
rsm-25 | NCU08812 | Q873E4 | Q7S8F8 | 37S ribosomal protein S25, mitochondrial. | Uncharacterized protein. | 0.424 |