Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rny_1Ribonuclease Y. (169 aa)    
Predicted Functional Partners:
AQR92760.1
Hypothetical protein.
 
     0.842
niaR
Putative transcription repressor NiaR.
       0.799
soxA
Monomeric sarcosine oxidase.
       0.799
AQR93234.1
Endodeoxyribonuclease RusA.
  
     0.570
AQR97957.1
Hypothetical protein.
  
     0.520
AQR96848.1
Hypothetical protein.
  
     0.468
AQR98212.1
Hypothetical protein.
  
     0.465
lon2_2
Lon protease 2.
  
     0.449
AQR97096.1
Coat F domain protein.
   
    0.447
AQR97524.1
Anaerobic benzoate catabolism transcriptional regulator.
  
 
   0.410
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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