STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR92760.1Hypothetical protein. (75 aa)    
Predicted Functional Partners:
soxA
Monomeric sarcosine oxidase.
 
    0.921
rny_1
Ribonuclease Y.
 
     0.860
niaR
Putative transcription repressor NiaR.
       0.826
AQR97524.1
Anaerobic benzoate catabolism transcriptional regulator.
  
    0.784
AQR93234.1
Endodeoxyribonuclease RusA.
  
     0.745
AQR97523.1
Tetratricopeptide repeat protein.
  
    0.687
AQR97679.1
CYTH domain protein.
  
     0.679
secG
Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
  
     0.641
AQR97527.1
Hypothetical protein.
  
     0.632
pyrK_3
Dihydroorotate dehydrogenase B, electron transfer subunit.
   
    0.629
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.