STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yciB_1Putative L,D-transpeptidase YciB precursor. (391 aa)    
Predicted Functional Partners:
AQR92765.1
Hypothetical protein.
       0.592
AQR96893.1
Hypothetical protein.
  
     0.589
chlD
Hypothetical protein.
  
     0.529
misCA
Membrane protein insertase MisCA precursor.
  
   
 0.523
AQR93304.1
LysM domain protein.
  
  
 0.497
AQR95973.1
HIRAN domain protein.
  
   
 0.489
pilN
Fimbrial assembly protein PilN.
  
     0.478
spoVD_2
Stage V sporulation protein D.
     
 0.474
spoVD_3
Stage V sporulation protein D.
     
 0.474
lacA_2
Galactoside O-acetyltransferase.
      
 0.468
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.