STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppiB_1Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (174 aa)    
Predicted Functional Partners:
htpG
Chaperone protein HtpG.
  
 0.927
AQR97917.1
long-chain-fatty-acid--AMP ligase FadD29.
  
 
 0.797
AQR94628.1
long-chain-fatty-acid--AMP ligase FadD32.
  
 
 0.784
cshA_3
DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.
 
 0.783
AQR94629.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
   
 
 0.782
cshA_2
DEAD-box ATP-dependent RNA helicase CshA.
 
 0.780
dbpA
ATP-dependent RNA helicase DbpA; DEAD-box RNA helicase involved in the assembly of the 50S ribosomal subunit. Has an RNA-dependent ATPase activity, which is specific for 23S rRNA, and a 3' to 5' RNA helicase activity that uses the energy of ATP hydrolysis to destabilize and unwind short rRNA duplexes.
 
 0.778
cshA_4
DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.
 
 0.776
AQR92786.1
Hypothetical protein.
       0.729
AQR92787.1
Anaerobic benzoate catabolism transcriptional regulator.
       0.729
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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