STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR92787.1Anaerobic benzoate catabolism transcriptional regulator. (221 aa)    
Predicted Functional Partners:
AQR92786.1
Hypothetical protein.
       0.844
AQR93767.1
Photosystem I assembly protein Ycf3.
  
   
 0.748
AQR97524.1
Anaerobic benzoate catabolism transcriptional regulator.
  
   
 0.748
cotI_1
Spore coat protein I.
  
     0.734
ppiB_1
Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
       0.729
cotI_3
Spore coat protein I.
  
     0.726
spoIIIAE2
Stage III sporulation protein SpoIIIAF.
  
     0.726
cotI_2
Spore coat protein I.
  
     0.725
AQR97523.1
Tetratricopeptide repeat protein.
  
     0.712
AQR92871.1
Hypothetical protein.
  
 
 
 0.710
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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