STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prtPPIII-type proteinase precursor; Belongs to the peptidase S8 family. (1063 aa)    
Predicted Functional Partners:
AQR93304.1
LysM domain protein.
 
  
 0.672
AQR94429.1
Hypothetical protein; Glycosyltransferase family 28 C-terminal domain.
  
    0.672
toxA_6
Toxin A.
 
 
 0.623
AQR95547.1
Terminase small subunit.
 
  
 0.621
yqfd
Putative stage IV sporulation protein YqfD.
  
    0.602
spoIIP
Stage II sporulation protein SpoIIP.
  
   
 0.600
AQR93772.1
Hypothetical protein.
 
    0.594
AQR96136.1
Hypothetical protein; N-terminal phage replisome organiser (Phage_rep_org_N).
  
    0.581
AQR92786.1
Hypothetical protein.
       0.578
AQR92787.1
Anaerobic benzoate catabolism transcriptional regulator.
       0.578
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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