Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AQR92790.1Hypothetical protein. (353 aa)    
Predicted Functional Partners:
ytxC
YtxC-like family protein.
 
     0.731
spoIIIAB
Stage III sporulation protein SpoAB.
  
    0.710
spoIIIAE
Stage III sporulation protein AE precursor.
  
    0.671
miaB_1
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase.
       0.649
comB
Putative 2-phosphosulfolactate phosphatase; Belongs to the ComB family.
 
     0.644
spoIIM
Stage II sporulation protein M.
  
    0.636
yabG
Sporulation-specific protease YabG.
  
     0.623
spoVB_3
Stage V sporulation protein B.
  
  
 0.609
cotI_3
Spore coat protein I.
  
     0.584
AQR92789.1
Radical SAM superfamily protein.
       0.563
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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