Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
miaB_1tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase. (309 aa)    
Predicted Functional Partners:
comB
Putative 2-phosphosulfolactate phosphatase; Belongs to the ComB family.
       0.749
AQR92790.1
Hypothetical protein.
       0.649
hemE
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
     
  0.647
AQR95848.1
Flavodoxin.
     
  0.584
rsmH
Ribosomal RNA small subunit methyltransferase H; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
  
    0.501
AQR92789.1
Radical SAM superfamily protein.
       0.486
sbmC_1
DNA gyrase inhibitor.
   
    0.469
sbmC_2
DNA gyrase inhibitor.
   
    0.469
sbmC_3
DNA gyrase inhibitor.
   
    0.469
AQR94865.1
Zinc-responsive transcriptional regulator.
  
    0.462
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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