STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spmBSpore maturation protein B. (174 aa)    
Predicted Functional Partners:
spmA
Spore maturation protein A.
  
 0.999
ylbJ
Sporulation integral membrane protein YlbJ.
 
  
 0.862
spoIIIAB
Stage III sporulation protein SpoAB.
  
  
 0.722
spoIIM
Stage II sporulation protein M.
  
  
 0.721
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.716
spoIIIAA
Hypothetical protein.
  
  
 0.654
spoIIIAD
Stage III sporulation protein AC/AD protein family protein.
  
   
 0.645
spoIIP
Stage II sporulation protein SpoIIP.
  
  
 0.626
AQR92800.1
Hypothetical protein.
       0.622
spoIIIAF
Hypothetical protein.
  
  
 0.612
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.