STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pepPXaa-Pro aminopeptidase. (414 aa)    
Predicted Functional Partners:
dctD
Cytidine and deoxycytidylate deaminase zinc-binding region.
  
  
 0.665
spmB
Spore maturation protein B.
       0.586
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.576
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.576
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
  
 
  0.568
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
    
  0.550
rub
Rubredoxin.
    
 0.534
AQR97074.1
Succinylglutamate desuccinylase / aspartoacylase family protein.
    
 0.531
doeB
N-alpha-acetyl-L-2,4-diaminobutyric acid deacetylase.
    
 0.531
spmA
Spore maturation protein A.
       0.525
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.