STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
AQR92804.1Putative peptidase. (591 aa)    
Predicted Functional Partners:
dctD
Cytidine and deoxycytidylate deaminase zinc-binding region.
  
  
 0.665
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.576
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.576
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
  
 
  0.568
map_2
Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
 
  
 0.561
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
    
  0.550
pepD
Cytosol non-specific dipeptidase.
 
 
 0.548
rub
Rubredoxin.
    
 0.534
AQR97074.1
Succinylglutamate desuccinylase / aspartoacylase family protein.
    
 0.531
doeB
N-alpha-acetyl-L-2,4-diaminobutyric acid deacetylase.
    
 0.531
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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