STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
agrB_1Accessory protein regulator protein B. (219 aa)    
Predicted Functional Partners:
cfg
Putative AgrB-like protein.
  
  
  0.925
citS_2
Sensor protein CitS.
 
  
  0.925
agrB_2
Accessory protein regulator protein B.
  
  
 
0.914
fixL
Sensor protein FixL.
    
  0.906
glnL
Nitrogen regulation protein NR(II).
    
  0.906
AQR94757.1
Hypothetical protein.
 
   
 0.799
AQR92836.1
Hypothetical protein.
       0.773
todS_1
Sensor histidine kinase TodS.
 
  
 0.713
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
      
 0.666
padR
Transcriptional regulator PadR-like family protein.
      
 0.631
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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