Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
spoVB_1Stage V sporulation protein B. (511 aa)    
Predicted Functional Partners:
mazG
Nucleoside triphosphate pyrophosphohydrolase.
  
    0.805
spoVT_1
Stage V sporulation protein T.
 
   
 0.738
AQR93906.1
Hypothetical protein; Belongs to the UPF0297 family.
  
     0.705
trmK
tRNA (adenine(22)-N(1))-methyltransferase.
  
     0.704
AQR92854.1
Ribosome-associated heat shock protein Hsp15.
  
    0.693
yabQ
Spore cortex protein YabQ.
 
  
 0.668
sigH
RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family.
  
    0.608
hup
DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
       0.563
yabP
Spore protein YabP.
  
  
 0.550
whiA
Putative sporulation transcription regulator WhiA; Involved in cell division and chromosome segregation.
  
     0.549
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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