Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AQR92854.1 | hup | CLSAP_01150 | CLSAP_01140 | Ribosome-associated heat shock protein Hsp15. | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.882 |
| AQR92854.1 | mazG | CLSAP_01150 | CLSAP_01130 | Ribosome-associated heat shock protein Hsp15. | Nucleoside triphosphate pyrophosphohydrolase. | 0.779 |
| AQR92854.1 | pheA | CLSAP_01150 | CLSAP_50530 | Ribosome-associated heat shock protein Hsp15. | P-protein. | 0.424 |
| AQR92854.1 | rplS | CLSAP_01150 | CLSAP_12860 | Ribosome-associated heat shock protein Hsp15. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.824 |
| AQR92854.1 | yabP | CLSAP_01150 | CLSAP_01160 | Ribosome-associated heat shock protein Hsp15. | Spore protein YabP. | 0.795 |
| AQR92854.1 | yabQ | CLSAP_01150 | CLSAP_01170 | Ribosome-associated heat shock protein Hsp15. | Spore cortex protein YabQ. | 0.821 |
| dnaA_1 | hup | CLSAP_00010 | CLSAP_01140 | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.676 |
| dnaA_1 | polA | CLSAP_00010 | CLSAP_09190 | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.733 |
| hup | AQR92854.1 | CLSAP_01140 | CLSAP_01150 | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Ribosome-associated heat shock protein Hsp15. | 0.882 |
| hup | dnaA_1 | CLSAP_01140 | CLSAP_00010 | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.676 |
| hup | mazG | CLSAP_01140 | CLSAP_01130 | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Nucleoside triphosphate pyrophosphohydrolase. | 0.642 |
| hup | pheA | CLSAP_01140 | CLSAP_50530 | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | P-protein. | 0.738 |
| hup | polA | CLSAP_01140 | CLSAP_09190 | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.667 |
| hup | rplS | CLSAP_01140 | CLSAP_12860 | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.649 |
| hup | rpsO | CLSAP_01140 | CLSAP_13130 | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.729 |
| hup | rpsT | CLSAP_01140 | CLSAP_09420 | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.756 |
| hup | yabP | CLSAP_01140 | CLSAP_01160 | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Spore protein YabP. | 0.666 |
| hup | yabQ | CLSAP_01140 | CLSAP_01170 | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Spore cortex protein YabQ. | 0.823 |
| mazG | AQR92854.1 | CLSAP_01130 | CLSAP_01150 | Nucleoside triphosphate pyrophosphohydrolase. | Ribosome-associated heat shock protein Hsp15. | 0.779 |
| mazG | hup | CLSAP_01130 | CLSAP_01140 | Nucleoside triphosphate pyrophosphohydrolase. | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.642 |
page 1 of 3