STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR92871.1Hypothetical protein. (343 aa)    
Predicted Functional Partners:
toxA_6
Toxin A.
 
  
 0.782
AQR93772.1
Hypothetical protein.
 
     0.781
AQR95973.1
HIRAN domain protein.
 
     0.781
lspA
Lipoprotein signal peptidase.
 
   
 0.774
AQR93239.1
Hypothetical protein.
  
   
 0.772
AQR93057.1
Putative RNA polymerase sigma factor SigI.
  
  
 0.769
AQR94429.1
Hypothetical protein; Glycosyltransferase family 28 C-terminal domain.
  
     0.767
AQR93217.1
Glutathionylspermidine synthase.
  
     0.763
AQR97523.1
Tetratricopeptide repeat protein.
  
 
 
 0.759
AQR93797.1
Hypothetical protein.
  
   
 0.758
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.