STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR92880.1Metal-dependent hydrolase. (212 aa)    
Predicted Functional Partners:
ulaA
Ascorbate-specific permease IIC component UlaA.
  
 
 0.667
fruA_2
PTS system fructose-specific EIIABC component.
    
 0.614
AQR97407.1
3-hexulose-6-phosphate synthase.
    
 0.579
AQR92882.1
UvrB/uvrC motif protein.
  
    0.563
ctsR
Transcriptional regulator CtsR; Belongs to the CtsR family.
       0.559
AQR92883.1
Putative ATP:guanido phosphotransferase.
  
    0.542
clpC
Negative regulator of genetic competence ClpC/MecB; Belongs to the ClpA/ClpB family.
  
    0.512
ulaB
Ascorbate-specific phosphotransferase enzyme IIB component.
  
 
 0.490
celCCF
Endoglucanase F precursor.
   
    0.447
licR_1
Putative licABCH operon regulator.
    
 0.408
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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