Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AQR92893.1 | AQR95143.1 | CLSAP_01670 | CLSAP_24570 | YacP-like NYN domain protein. | S4 domain protein. | 0.714 |
| AQR92893.1 | aviRb | CLSAP_01670 | CLSAP_24380 | YacP-like NYN domain protein. | 23S rRNA (uridine(2479)-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.681 |
| AQR92893.1 | cysS_1 | CLSAP_01670 | CLSAP_01640 | YacP-like NYN domain protein. | cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.867 |
| AQR92893.1 | cysS_2 | CLSAP_01670 | CLSAP_23420 | YacP-like NYN domain protein. | cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.739 |
| AQR92893.1 | mrnC | CLSAP_01670 | CLSAP_01650 | YacP-like NYN domain protein. | Mini-ribonuclease 3; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | 0.972 |
| AQR92893.1 | sigH | CLSAP_01670 | CLSAP_01680 | YacP-like NYN domain protein. | RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family. | 0.846 |
| AQR92893.1 | spoU | CLSAP_01670 | CLSAP_01660 | YacP-like NYN domain protein. | Putative TrmH family tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.966 |
| AQR95143.1 | AQR92893.1 | CLSAP_24570 | CLSAP_01670 | S4 domain protein. | YacP-like NYN domain protein. | 0.714 |
| AQR95143.1 | AQR95151.1 | CLSAP_24570 | CLSAP_24650 | S4 domain protein. | Fibronectin-binding protein A N-terminus (FbpA). | 0.526 |
| AQR95143.1 | mrnC | CLSAP_24570 | CLSAP_01650 | S4 domain protein. | Mini-ribonuclease 3; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | 0.749 |
| AQR95143.1 | rplC | CLSAP_24570 | CLSAP_01850 | S4 domain protein. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.551 |
| AQR95143.1 | rpmG2 | CLSAP_24570 | CLSAP_01710 | S4 domain protein. | 50S ribosomal protein L33 2; Belongs to the bacterial ribosomal protein bL33 family. | 0.624 |
| AQR95151.1 | AQR95143.1 | CLSAP_24650 | CLSAP_24570 | Fibronectin-binding protein A N-terminus (FbpA). | S4 domain protein. | 0.526 |
| AQR95151.1 | mrnC | CLSAP_24650 | CLSAP_01650 | Fibronectin-binding protein A N-terminus (FbpA). | Mini-ribonuclease 3; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | 0.771 |
| AQR95151.1 | rplC | CLSAP_24650 | CLSAP_01850 | Fibronectin-binding protein A N-terminus (FbpA). | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.667 |
| AQR95151.1 | rpmG2 | CLSAP_24650 | CLSAP_01710 | Fibronectin-binding protein A N-terminus (FbpA). | 50S ribosomal protein L33 2; Belongs to the bacterial ribosomal protein bL33 family. | 0.596 |
| aviRb | AQR92893.1 | CLSAP_24380 | CLSAP_01670 | 23S rRNA (uridine(2479)-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | YacP-like NYN domain protein. | 0.681 |
| aviRb | cysS_1 | CLSAP_24380 | CLSAP_01640 | 23S rRNA (uridine(2479)-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.566 |
| aviRb | cysS_2 | CLSAP_24380 | CLSAP_23420 | 23S rRNA (uridine(2479)-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.566 |
| aviRb | mrnC | CLSAP_24380 | CLSAP_01650 | 23S rRNA (uridine(2479)-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Mini-ribonuclease 3; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | 0.688 |
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