amiC protein (Clostridium saccharoperbutylacetonicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

amiC

N-acetylmuramoyl-L-alanine amidase AmiC precursor. (220 aa)

Predicted Functional Partners:

toxB_2

0.926

amiA

0.924

cwlC

0.900

lytA_9

0.900

mepH_2

0.722

ykfA_2

0.688

ykfA_1

0.670

mccF

0.670

ykuD

0.654

gluP_2

0.647

Your Current Organism:

Clostridium saccharoperbutylacetonicum

NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
amiA	amiC	CLSAP_54090	CLSAP_02220	N-acetylmuramoyl-L-alanine amidase AmiA precursor.	N-acetylmuramoyl-L-alanine amidase AmiC precursor.	0.924
amiA	cwlC	CLSAP_54090	CLSAP_03680	N-acetylmuramoyl-L-alanine amidase AmiA precursor.	Sporulation-specific N-acetylmuramoyl-L-alanine amidase.	0.900
amiA	gluP_2	CLSAP_54090	CLSAP_43770	N-acetylmuramoyl-L-alanine amidase AmiA precursor.	Rhomboid protease GluP.	0.647
amiA	lytA_9	CLSAP_54090	CLSAP_25130	N-acetylmuramoyl-L-alanine amidase AmiA precursor.	Autolysin.	0.900
amiA	mccF	CLSAP_54090	CLSAP_31730	N-acetylmuramoyl-L-alanine amidase AmiA precursor.	Microcin C7 self-immunity protein MccF.	0.560
amiA	mepH_2	CLSAP_54090	CLSAP_35400	N-acetylmuramoyl-L-alanine amidase AmiA precursor.	Murein DD-endopeptidase MepH precursor.	0.722
amiA	toxB_2	CLSAP_54090	CLSAP_51360	N-acetylmuramoyl-L-alanine amidase AmiA precursor.	Toxin B.	0.917
amiA	ykfA_1	CLSAP_54090	CLSAP_30770	N-acetylmuramoyl-L-alanine amidase AmiA precursor.	Putative murein peptide carboxypeptidase.	0.560
amiA	ykfA_2	CLSAP_54090	CLSAP_39150	N-acetylmuramoyl-L-alanine amidase AmiA precursor.	Putative murein peptide carboxypeptidase.	0.560
amiA	ykuD	CLSAP_54090	CLSAP_42470	N-acetylmuramoyl-L-alanine amidase AmiA precursor.	Putative L,D-transpeptidase YkuD.	0.654
amiC	amiA	CLSAP_02220	CLSAP_54090	N-acetylmuramoyl-L-alanine amidase AmiC precursor.	N-acetylmuramoyl-L-alanine amidase AmiA precursor.	0.924
amiC	cwlC	CLSAP_02220	CLSAP_03680	N-acetylmuramoyl-L-alanine amidase AmiC precursor.	Sporulation-specific N-acetylmuramoyl-L-alanine amidase.	0.900
amiC	gluP_2	CLSAP_02220	CLSAP_43770	N-acetylmuramoyl-L-alanine amidase AmiC precursor.	Rhomboid protease GluP.	0.647
amiC	lytA_9	CLSAP_02220	CLSAP_25130	N-acetylmuramoyl-L-alanine amidase AmiC precursor.	Autolysin.	0.900
amiC	mccF	CLSAP_02220	CLSAP_31730	N-acetylmuramoyl-L-alanine amidase AmiC precursor.	Microcin C7 self-immunity protein MccF.	0.670
amiC	mepH_2	CLSAP_02220	CLSAP_35400	N-acetylmuramoyl-L-alanine amidase AmiC precursor.	Murein DD-endopeptidase MepH precursor.	0.722
amiC	toxB_2	CLSAP_02220	CLSAP_51360	N-acetylmuramoyl-L-alanine amidase AmiC precursor.	Toxin B.	0.926
amiC	ykfA_1	CLSAP_02220	CLSAP_30770	N-acetylmuramoyl-L-alanine amidase AmiC precursor.	Putative murein peptide carboxypeptidase.	0.670
amiC	ykfA_2	CLSAP_02220	CLSAP_39150	N-acetylmuramoyl-L-alanine amidase AmiC precursor.	Putative murein peptide carboxypeptidase.	0.688
amiC	ykuD	CLSAP_02220	CLSAP_42470	N-acetylmuramoyl-L-alanine amidase AmiC precursor.	Putative L,D-transpeptidase YkuD.	0.654

page 1 of 4

Server load: medium (46%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About