Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
essBPutative membrane protein essB. (410 aa)    
Predicted Functional Partners:
eccCa1
ESX-1 secretion system protein EccCa1.
 
 
 0.991
esxA
Virulence factor EsxA; Belongs to the WXG100 family.
 
  
 0.956
AQR92965.1
Hypothetical protein.
 
  
 0.936
spoIIIE
DNA translocase SpoIIIE.
  
 
 0.851
AQR92961.1
Hypothetical protein.
       0.773
AQR92962.1
YukD.
       0.773
yqfd
Putative stage IV sporulation protein YqfD.
   
    0.474
yqfC
YabP family protein.
   
    0.447
smc_1
Chromosome partition protein Smc.
  
  
 0.412
pip3
ABC-2 family transporter protein.
  
  
 0.412
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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