STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
eccCa1ESX-1 secretion system protein EccCa1. (1476 aa)    
Predicted Functional Partners:
esxA
Virulence factor EsxA; Belongs to the WXG100 family.
 
 
 0.978
essB
Putative membrane protein essB.
 
  
 0.977
AQR92965.1
Hypothetical protein.
 
  
 0.847
AQR92961.1
Hypothetical protein.
       0.782
AQR92962.1
YukD.
       0.782
divIB
Cell division protein DivIB; Essential cell division protein.
  
 
 0.769
AQR95047.1
Hypothetical protein.
  
 
 0.618
yqfC
YabP family protein.
   
    0.593
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
  
 0.575
ispH2
30S ribosomal protein S1 homolog.
 
  
 0.565
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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