Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR92970.1Hypothetical protein. (585 aa)    
Predicted Functional Partners:
gltB_2
Ferredoxin-dependent glutamate synthase 1.
     
 0.877
fliN
Flagellar motor switch protein FliN.
   
 
 0.782
AQR92969.1
Hypothetical protein.
       0.723
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
   
 
  0.700
lagD
lactococcin-G-processing and transport ATP-binding protein LagD.
  
 
 0.677
AQR95973.1
HIRAN domain protein.
 
 
 0.605
AQR94808.1
Glycosyl hydrolases family 39.
 
 
 0.568
AQR92968.1
Hypothetical protein.
       0.552
pelX
Pectate disaccharide-lyase precursor.
 
 
 
 0.552
AQR93687.1
Hypothetical protein.
 
 
 0.545
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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