STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR92984.1alpha-L-fucosidase. (492 aa)    
Predicted Functional Partners:
hypBA1_1
Non-reducing end beta-L-arabinofuranosidase.
 
     0.646
agaA
Alpha-galactosidase A precursor.
 
     0.642
ramA2
Bacterial alpha-L-rhamnosidase.
 
   
 0.630
bglY
Beta-galactosidase BglY.
 
 
 0.517
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
     
 0.509
xynB_9
Beta-xylosidase.
  
     0.507
cbgA_1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
   
 0.501
AQR96969.1
GDSL-like lipase/acylhydrolase.
 
     0.478
AQR97297.1
Non-reducing end alpha-L-arabinofuranosidase BoGH43B precursor; Belongs to the glycosyl hydrolase 43 family.
  
     0.467
fumD
Fumonisin B1 esterase; Belongs to the type-B carboxylesterase/lipase family.
  
  
 0.465
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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