STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR93033.1Hypothetical protein. (364 aa)    
Predicted Functional Partners:
grsB
Gramicidin S synthase 2.
  
 0.967
dhbF
Dimodular nonribosomal peptide synthase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.963
lcfB_1
long-chain-fatty-acid--CoA ligase.
  
 
 0.855
AQR94629.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
  
 0.850
AQR97917.1
long-chain-fatty-acid--AMP ligase FadD29.
  
 
 0.831
acpP_1
Acyl carrier protein.
       0.773
AQR94628.1
long-chain-fatty-acid--AMP ligase FadD32.
  
 
 0.739
AQR96122.1
Hypothetical protein.
  
 
 0.685
AQR93036.1
Hypothetical protein.
       0.675
acdA_1
acyl-CoA dehydrogenase.
    
 0.636
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.