Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rssANTE family protein RssA. (279 aa)    
Predicted Functional Partners:
tmoS_3
Sensor histidine kinase TmoS.
  
    0.583
rpfG_11
Cyclic di-GMP phosphodiesterase response regulator RpfG.
   
    0.567
rpfG_12
Cyclic di-GMP phosphodiesterase response regulator RpfG.
   
    0.567
adrA_2
Putative diguanylate cyclase AdrA.
   
    0.567
ydaM_2
Putative diguanylate cyclase YdaM.
   
    0.567
gmr_4
Cyclic di-GMP phosphodiesterase Gmr.
   
    0.567
lutR_1
HTH-type transcriptional regulator LutR.
       0.489
fra
Intracellular iron chaperone frataxin.
   
    0.447
ycfH
Putative deoxyribonuclease YcfH.
  
    0.402
tatD
Tat-linked quality control protein TatD.
  
    0.402
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.