STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
senX3Signal-transduction histidine kinase senX3. (368 aa)    
Predicted Functional Partners:
luxQ_1
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
0.972
rpfC_1
Sensory/regulatory protein RpfC.
 
 
0.956
rpfC_2
Sensory/regulatory protein RpfC.
 
 
0.955
barA_2
Signal transduction histidine-protein kinase BarA.
 
 
0.954
barA_1
Signal transduction histidine-protein kinase BarA.
 
 
0.944
todS_1
Sensor histidine kinase TodS.
 
 
0.937
todS_2
Sensor histidine kinase TodS.
 
 
0.937
saeS
Histidine protein kinase SaeS.
 
 
 0.927
cheV
Chemotaxis protein CheV.
  
 
 0.916
cph2_2
Phytochrome-like protein cph2.
 
 
 0.879
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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