STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kfoCChondroitin synthase. (294 aa)    
Predicted Functional Partners:
AQR93081.1
Glycogen synthase.
 
 0.991
AQR93080.1
Polysaccharide biosynthesis protein.
 
  
 0.920
senX3
Signal-transduction histidine kinase senX3.
     
 0.719
hupR1_1
Hydrogenase transcriptional regulatory protein hupR1.
  
    0.660
epsH
Putative glycosyltransferase EpsH.
  
     0.620
arnC_1
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase.
 
 0.617
wcaJ_2
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
 
  
 0.599
rfbD
UDP-galactopyranose mutase precursor.
  
 0.573
AQR96993.1
PGL/p-HBAD biosynthesis glycosyltransferase.
  
     0.559
AQR93089.1
Hypothetical protein.
  
  
 0.545
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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