STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arnC_1Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase. (378 aa)    
Predicted Functional Partners:
luxQ_1
Autoinducer 2 sensor kinase/phosphatase LuxQ.
  
 
 0.863
ycdT_1
Putative diguanylate cyclase YcdT.
  
 0.842
AQR93084.1
Hpt domain protein.
 
  
 0.840
hupR1_1
Hydrogenase transcriptional regulatory protein hupR1.
  
  
 0.815
ycf3
Photosystem I assembly protein Ycf3.
  
 0.808
epsE_1
Putative glycosyltransferase EpsE.
  
 0.790
AQR96122.1
Hypothetical protein.
  
 
 0.745
gluP_1
Rhomboid protease GluP.
  
 0.745
AQR96389.1
Tetratricopeptide repeat protein.
  
 0.729
AQR92950.1
Lipoprotein NlpI.
  
 0.728
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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