Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xerC_1Tyrosine recombinase XerC. (210 aa)    
Predicted Functional Partners:
xerD_3
Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.758
xerD_1
Tyrosine recombinase XerD.
  
     0.747
xerD_2
Tyrosine recombinase XerD.
  
     0.735
xerD_6
Tyrosine recombinase XerD.
  
     0.726
spoIIIE
DNA translocase SpoIIIE.
 
   
 0.604
prs_2
Ribose-phosphate pyrophosphokinase.
  
    0.585
xerD_5
Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.579
rpmE
50S ribosomal protein L31; Binds the 23S rRNA.
  
 
 
 0.498
ilvC_2
Ketol-acid reductoisomerase.
  
    0.489
parB
Putative chromosome-partitioning protein ParB; Belongs to the ParB family.
  
  
 0.486
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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