Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
toxA_1Toxin A. (560 aa)    
Predicted Functional Partners:
lytA_28
Autolysin.
  
     0.774
AQR93119.1
Hypothetical protein.
       0.773
AQR93800.1
Putative cell wall binding repeat protein.
  
    0.773
lytA_35
Autolysin.
  
     0.770
lytA_23
Autolysin.
 
   
 0.768
AQR97179.1
Cadherin-like beta sandwich domain protein.
  
     0.766
lytA_14
Autolysin.
  
     0.752
lytA_9
Autolysin.
  
     0.750
AQR95592.1
Putative cell wall binding repeat protein.
  
     0.737
AQR93121.1
Hypothetical protein.
       0.723
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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