Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lytA_3Autolysin. (1568 aa)    
Predicted Functional Partners:
AQR93729.1
Hypothetical protein.
   
 
 0.683
celK
Cellulose 1,4-beta-cellobiosidase precursor.
 
 0.672
celD
Endoglucanase D precursor.
 
 0.668
celS
Endoglucanase S precursor; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
 
 0.654
abfB_1
Extracellular exo-alpha-L-arabinofuranosidase precursor.
 
    
0.598
AQR93592.1
Fibronectin type III domain protein.
  
 0.572
xylB4
Non-reducing end alpha-L-arabinofuranosidase BoGH43A precursor; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.553
celCCF
Endoglucanase F precursor.
  
 
 0.502
AQR97309.1
Hypothetical protein.
   
 0.499
AQR97691.1
Hypothetical protein.
   
 0.499
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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