STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pinRecombinase. (518 aa)    
Predicted Functional Partners:
AQR93162.1
Hypothetical protein.
       0.788
AQR97602.1
Recombinase.
 
     0.723
AQR97603.1
Hypothetical protein; Resolvase, N terminal domain.
 
     0.712
AQR97916.1
Hypothetical protein.
 
     0.531
AQR93164.1
Putative AAA-ATPase.
     
 0.479
algA_2
Alginate biosynthesis protein AlgA.
       0.478
AQR98121.1
Phage capsid family protein.
 
  
 0.467
AQR95547.1
Terminase small subunit.
  
    0.461
pinR_2
Putative DNA-invertase from lambdoid prophage Rac.
 
  
 0.451
dsbD
Thiol:disulfide interchange protein DsbD precursor.
   
    0.446
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.