STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR93189.1Y_Y_Y domain protein. (786 aa)    
Predicted Functional Partners:
slt_1
Soluble lytic murein transglycosylase precursor.
     
 0.852
ykuD
Putative L,D-transpeptidase YkuD.
  
 
 0.663
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
       0.628
AQR93188.1
Hypothetical protein; Belongs to the UPF0178 family.
       0.628
fimA
Fimbrial protein precursor.
   
  
 0.610
mepH_2
Murein DD-endopeptidase MepH precursor.
  
 
 0.580
gluP_1
Rhomboid protease GluP.
  
   0.576
mepH_3
Murein DD-endopeptidase MepH precursor.
  
 
 0.542
gluP_2
Rhomboid protease GluP.
  
   0.539
xcpT
Type II secretion system protein G precursor.
   
  
 0.535
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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