Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
comPSensor histidine kinase ComP. (369 aa)    
Predicted Functional Partners:
devR
Transcriptional regulatory protein DevR (DosR).
 
 0.989
degU_2
Transcriptional regulatory protein DegU.
 
 0.942
degU_3
Transcriptional regulatory protein DegU.
 
 0.939
AQR93228.1
ABC-2 family transporter protein.
 
  
 0.662
AQR93229.1
ABC-2 family transporter protein.
 
  
 0.631
rpfC_1
Sensory/regulatory protein RpfC.
  
 
 0.544
rpfC_2
Sensory/regulatory protein RpfC.
  
 
 0.544
drrA_1
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
 
   
 0.541
barA_2
Signal transduction histidine-protein kinase BarA.
  
 
 0.509
rhaS_2
HTH-type transcriptional activator RhaS.
  
  
 0.499
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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