Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rhaS_2HTH-type transcriptional activator RhaS. (280 aa)    
Predicted Functional Partners:
eamA_1
Putative amino-acid metabolite efflux pump.
 
    0.913
tetD_3
Transposon Tn10 TetD protein.
  
     0.628
btr_3
HTH-type transcriptional activator Btr.
  
     0.623
yesS_2
HTH-type transcriptional regulator YesS.
  
     0.616
rhaS_7
HTH-type transcriptional activator RhaS.
  
     0.615
soxS
Regulatory protein SoxS.
  
     0.604
gltB_2
Ferredoxin-dependent glutamate synthase 1.
    
 0.597
tetD_4
Transposon Tn10 TetD protein.
  
     0.553
tetD_2
Transposon Tn10 TetD protein.
  
     0.551
eamA_3
Putative amino-acid metabolite efflux pump.
 
    0.524
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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