STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR93232.1ferredoxin--NADP reductase. (316 aa)    
Predicted Functional Partners:
AQR93544.1
Hypothetical protein.
    0.980
lhgO
L-2-hydroxyglutarate oxidase LhgO.
  
 0.938
soxA
Monomeric sarcosine oxidase.
  
 0.822
hcnB_2
Hydrogen cyanide synthase subunit HcnB.
 
  
 0.785
ahpC
Alkyl hydroperoxide reductase subunit C; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
 
 0.783
yedF
Hypothetical protein.
     
 0.722
hcr
NADH oxidoreductase hcr.
   
 
 0.713
glpP
Glycerol-3-phosphate responsive antiterminator.
 
    0.698
hcnC
Hydrogen cyanide synthase subunit HcnC precursor.
 
   
 0.686
trxA_1
Thioredoxin; Belongs to the thioredoxin family.
  
 
 0.638
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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