STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR93234.1Endodeoxyribonuclease RusA. (216 aa)    
Predicted Functional Partners:
AQR93233.1
Multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1.
 
     0.844
AQR97523.1
Tetratricopeptide repeat protein.
 
   
 0.769
AQR93767.1
Photosystem I assembly protein Ycf3.
  
     0.768
AQR97735.1
Hypothetical protein.
  
     0.768
AQR97524.1
Anaerobic benzoate catabolism transcriptional regulator.
 
   
 0.766
AQR97527.1
Hypothetical protein.
  
     0.754
AQR97679.1
CYTH domain protein.
  
     0.754
AQR97957.1
Hypothetical protein.
  
     0.746
AQR92760.1
Hypothetical protein.
  
     0.745
AQR98249.1
Hypothetical protein.
  
     0.733
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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