Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cotI_1Spore coat protein I. (338 aa)    
Predicted Functional Partners:
glgA_1
Capsular glucan synthase.
 
  
 0.904
cotI_2
Spore coat protein I.
 
   
0.901
AQR93242.1
Hypothetical protein.
  
    0.898
AQR92787.1
Anaerobic benzoate catabolism transcriptional regulator.
  
     0.734
AQR93304.1
LysM domain protein.
 
   
 0.722
AQR92810.1
Hypothetical protein.
  
  
 0.716
AQR97524.1
Anaerobic benzoate catabolism transcriptional regulator.
  
     0.690
AQR97757.1
Divergent AAA domain protein.
  
     0.688
ytxC
YtxC-like family protein.
  
    0.687
spoIIIAE2
Stage III sporulation protein SpoIIIAF.
  
     0.672
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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