STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cotI_2Spore coat protein I. (344 aa)    
Predicted Functional Partners:
cotI_1
Spore coat protein I.
 
   
0.915
glgA_1
Capsular glucan synthase.
 
  
 0.883
AQR93242.1
Hypothetical protein.
  
    0.791
AQR93304.1
LysM domain protein.
 
   
 0.739
AQR92787.1
Anaerobic benzoate catabolism transcriptional regulator.
  
     0.725
AQR92810.1
Hypothetical protein.
  
  
 0.705
yqfd
Putative stage IV sporulation protein YqfD.
  
   
 0.687
ytxC
YtxC-like family protein.
  
    0.672
spoIIIAE2
Stage III sporulation protein SpoIIIAF.
  
     0.672
AQR95836.1
Small, acid-soluble spore protein, alpha/beta type.
  
   
 0.658
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.