STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cotI_2Spore coat protein I. (344 aa)    
Predicted Functional Partners:
cotI_1
Spore coat protein I.
 
   
0.901
glgA_1
Capsular glucan synthase.
 
  
 0.879
AQR93242.1
Hypothetical protein.
  
    0.774
AQR93304.1
LysM domain protein.
 
   
 0.735
AQR92787.1
Anaerobic benzoate catabolism transcriptional regulator.
  
     0.725
AQR92810.1
Hypothetical protein.
  
  
 0.707
ytxC
YtxC-like family protein.
  
    0.672
spoIIIAE2
Stage III sporulation protein SpoIIIAF.
  
     0.672
AQR95836.1
Small, acid-soluble spore protein, alpha/beta type.
  
     0.657
AQR97524.1
Anaerobic benzoate catabolism transcriptional regulator.
  
     0.657
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.