Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR93255.1Pentapeptide repeat protein. (276 aa)    
Predicted Functional Partners:
AQR95913.1
Hypothetical protein.
 
     0.554
mshD_1
Mycothiol acetyltransferase.
       0.506
lyc_4
Autolytic lysozyme.
 
 
 
 0.478
lyc_3
Autolytic lysozyme.
 
 
 
 0.474
tetA_2
Tetracycline resistance protein, class C.
   
  
 0.456
tetA_4
Tetracycline resistance protein, class B.
   
  
 0.456
yvdP_1
Putative FAD-linked oxidoreductase YvdP.
  
     0.449
AQR95912.1
Phosphotransferase enzyme family protein.
  
     0.435
rutD_3
Putative aminoacrylate hydrolase RutD.
 
     0.418
AQR94322.1
Isoform II.
  
   
 0.417
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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