STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pelL_1Pectate lyase L precursor. (336 aa)    
Predicted Functional Partners:
engD
Endoglucanase D precursor; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
 0.874
pel
Pectate trisaccharide-lyase precursor.
  
 0.854
pemA_1
Pectinesterase A precursor.
 
  
 0.773
pemA_2
Pectinesterase A precursor.
 
  
 0.771
xynY_1
Endo-1,4-beta-xylanase Y precursor.
 
   
 0.734
AQR93489.1
Hypothetical protein.
  
 
 0.720
celE
Endoglucanase E precursor.
 
 0.720
xynD_1
Arabinoxylan arabinofuranohydrolase precursor; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.718
xynD_2
Arabinoxylan arabinofuranohydrolase precursor; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.715
xynC_1
Glucuronoxylanase XynC precursor; Belongs to the glycosyl hydrolase 30 family.
  
     0.709
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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