STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cfgPutative AgrB-like protein. (200 aa)    
Predicted Functional Partners:
agrB_1
Accessory protein regulator protein B.
  
  
  0.925
citS_2
Sensor protein CitS.
 
  
  0.918
agrB_2
Accessory protein regulator protein B.
  
  
  0.917
fixL
Sensor protein FixL.
    
  0.904
glnL
Nitrogen regulation protein NR(II).
    
  0.904
AQR93261.1
Hypothetical protein.
       0.773
AQR96550.1
Hypothetical protein.
  
     0.656
AQR92787.1
Anaerobic benzoate catabolism transcriptional regulator.
  
     0.633
AQR96020.1
Zinc-responsive transcriptional regulator.
  
     0.574
AQR98243.1
MazG-like family protein.
  
     0.565
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.