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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR93271.1Hypothetical protein. (552 aa)    
Predicted Functional Partners:
AQR93272.1
YibE/F-like protein.
 
    0.760
AQR96390.1
Ankyrin repeat protein.
   
 0.647
AQR94172.1
Hypothetical protein.
  
     0.545
tpa
Taurine--pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
     0.503
csgD
CsgBAC operon transcriptional regulatory protein.
  
     0.493
AQR95845.1
Glyoxalase-like domain protein.
  
    0.490
AQR93728.1
Bacterial Ig-like domain protein.
  
     0.452
yhcR
Endonuclease YhcR precursor; Belongs to the 5'-nucleotidase family.
 
  
 0.447
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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