STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
qacRHTH-type transcriptional regulator QacR. (206 aa)    
Predicted Functional Partners:
fadR_3
Fatty acid metabolism regulator protein.
  
     0.690
AQR93286.1
2,6-dihydropseudooxynicotine hydrolase; Belongs to the UPF0255 family.
       0.615
AQR97926.1
Gluconeogenesis factor; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
  
 0.522
AQR94525.1
DNA-binding transcriptional regulator EnvR.
  
     0.507
isfD
Sulfoacetaldehyde reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.491
kstR2_1
HTH-type transcriptional repressor KstR2.
  
     0.478
yvdT
Putative HTH-type transcriptional regulator YvdT.
  
     0.451
icaR_1
Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR.
  
     0.446
kstR2_2
HTH-type transcriptional repressor KstR2.
  
     0.446
bm3R1_1
HTH-type transcriptional repressor Bm3R1.
  
     0.437
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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