Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mta_1HTH-type transcriptional activator mta. (247 aa)    
Predicted Functional Partners:
bmrR_4
Multidrug-efflux transporter 1 regulator.
  
     0.647
bmrR_3
Multidrug-efflux transporter 1 regulator.
  
     0.610
adhR_1
HTH-type transcriptional regulator AdhR.
 
   
 0.570
AQR93292.1
Hypothetical protein.
 
     0.565
merR1_2
Mercuric resistance operon regulatory protein.
  
   
 0.558
glnA_2
Glutamine synthetase.
  
 
 0.522
AQR93290.1
Hypothetical protein.
       0.496
merR1_1
Mercuric resistance operon regulatory protein.
  
   
 0.480
sigA
RNA polymerase sigma factor SigA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.458
rpoS
RNA polymerase sigma factor RpoS; Belongs to the sigma-70 factor family.
  
 
 0.458
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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