Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AQR93304.1LysM domain protein. (520 aa)    
Predicted Functional Partners:
spoIIIAG
SpoIIIAH-like protein.
  
  
 0.808
spoIIGA
Sporulation sigma-E factor-processing peptidase; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
  
 0.789
AQR92810.1
Hypothetical protein.
  
   
 0.780
spoIIIAE2
Stage III sporulation protein SpoIIIAF.
  
    0.776
spoIIIAF
Hypothetical protein.
  
  
 0.775
aprX
Serine protease AprX.
 
 
 
 0.761
ssbB
Single-stranded DNA-binding protein B.
 
   
 0.748
mreD
Rod shape-determining protein MreD.
  
   
 0.746
yqfd
Putative stage IV sporulation protein YqfD.
  
     0.745
cotI_2
Spore coat protein I.
 
   
 0.735
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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