Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
prs_2Ribose-phosphate pyrophosphokinase. (218 aa)    
Predicted Functional Partners:
AQR93345.1
Hypothetical protein.
  
  
 0.953
comFB
Late competence development protein ComFB.
  
  
 0.939
dprA
Hypothetical protein.
 
 
 0.912
AQR93633.1
ComEC family competence protein.
 
  
 0.821
purD
Phosphoribosylamine--glycine ligase; Belongs to the GARS family.
    
 0.813
barA_2
Signal transduction histidine-protein kinase BarA.
  
  
 0.805
nagA
N-acetylglucosamine-6-phosphate deacetylase.
  
    0.805
ilvC_2
Ketol-acid reductoisomerase.
   
  
 0.783
recD2
ATP-dependent RecD-like DNA helicase; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
       0.779
flgC
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.772
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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